Is there a harness off the battery for a charger to plug in? Sometimes it's better if there is just the two cables off the battery and accessories wired off at other areas.
As Mike mentioned, is there a 'wait for' kind of no power? Meaning, no power lighting off lights and starter button, but then wait for awhile, power comes back on, yes? 
If yes, sounds like more main grounds like ground cable to frame/battery. Thus the temp gun for the ground cable ends showing heat when 'no power' aimed at the grounds with starter button pushed.